About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133509499_133510828_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
133509499 - 133510828
Intron Length:
1330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
AATTTGTAAAAA
Flanking Amino Acid:
TSKIPLTSVTATSKSETVID
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
73.7
33.1
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
93.7
0.98
0.6
92.5
17.4
Minor 5ss
38.7
-1.3
2.9
47.9
47.8
Minor BPS
45.1
-0.3
2.3
59.62
40.1

Associated Gene:

Gene:
TMEM123
Ensembl Gene ID:
ENSAPLG00000005784
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005979
133507516 - 133522787
15272