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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133548067_133549375_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
133548067 - 133549375
Intron Length:
1309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGACTA
5'SS Class:
major
3'SS Sequence:
TTTTCAAATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTCTTTTCAAAT
Flanking Amino Acid:
ADIVIRFARHEHGDGYPFDG
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
0.9
69.5
36.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
73.2
0.52
0.9
68.5
36.5
Minor 5ss
30.2
-2.3
3.1
36.2
41.7
Minor BPS
59.2
0.37
1.6
76.7
40.1

Associated Gene:

Gene:
MMP7
Ensembl Gene ID:
ENSAPLG00000005792
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005990
133545431 - 133550962
5532