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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133549525_133549630_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
133549525 - 133549630
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTTAGTGAT
5'SS Class:
major
3'SS Sequence:
CTTTTTCTGCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTAAAT
U12 Branch Point Sequence:
ACAGACTAAATG
Flanking Amino Acid:
PRWNKKLLTYKIVNYTPDLP
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.2
76.3
32.7
Major BPS
61
0.27
1.1
67.3
35.2
Major PPT
82
0.72
0.9
76.9
37.3
Minor 5ss
32.4
-2
3.1
42.3
38.5
Minor BPS
43.7
-0.6
1.9
43.02
42.7

Associated Gene:

Gene:
MMP7
Ensembl Gene ID:
ENSAPLG00000005792
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005990
133545431 - 133550962
5532