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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133616989_133617229_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
133616989 - 133617229
Intron Length:
241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGTAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTCAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAC
U12 Branch Point Sequence:
TTTTTTTCAATA
Flanking Amino Acid:
NMKDQILFFKGNMFWIISGY
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
0.9
74.1
32
Major BPS
65.2
0.38
1
57.3
39.1
Major PPT
83.6
0.76
0.8
82
28.5
Minor 5ss
32.3
-2
3.4
45.9
49.3
Minor BPS
68.8
0.59
1.4
78.75
31.7

Associated Gene:

Gene:
MMP27
Ensembl Gene ID:
ENSAPLG00000005931
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006134
133615176 - 133621984
6809