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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133617361_133618105_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
133617361 - 133618105
Intron Length:
745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
ATATTTTAATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
TTTACTATAAAA
Flanking Amino Acid:
LRREIMFLKGRHLWRVYPDN
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
71.8
0.49
1
71.8
42.3
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
59.2
0.28
1.7
74.66
36.2

Associated Gene:

Gene:
MMP27
Ensembl Gene ID:
ENSAPLG00000005931
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006134
133615176 - 133621984
6809