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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133618230_133618318_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
133618230 - 133618318
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GATTCTCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
GTTTCTACAAAT
Flanking Amino Acid:
DDISGIQSIYGSPTKIPDKS
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
81.1
26.8
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
69.7
0.44
0.8
66.9
35.1
Minor 5ss
29.7
-2.3
2.6
30.1
36.9
Minor BPS
51.2
0.12
1.9
75.72
40.3

Associated Gene:

Gene:
MMP27
Ensembl Gene ID:
ENSAPLG00000005931
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006134
133615176 - 133621984
6809