Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133618481_133620411_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

133618481 - 133620411

Intron Length:

1931

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTATGTAAC

5'SS Class:

strong_major

3'SS Sequence:

TCCATTTCTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATCCAT

U12 Branch Point Sequence:

ATCTCTATATCC

Flanking Amino Acid:

EDEDWTTGSDGFNLFLVAAH

Intron Amino Acid Position:

197

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

0.9

75.8

33.3

Major BPS

69.5

0.49

1.2

78.7

34.9

Major PPT

71.1

0.47

33.6

Minor 5ss

42.3

-0.9

2.5

50.7

40.4

Minor BPS

0.01

1.9

65.36

40.5

Associated Gene:

Gene:

MMP27

Ensembl Gene ID:

ENSAPLG00000005931

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006134

133615176 - 133621984

6809