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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133627903_133628113_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
133627903 - 133628113
Intron Length:
211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTACTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTAAATATAACT
Flanking Amino Acid:
GRVDAAFQTDGYVYFFHGTT
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
81.5
0.71
0.8
79.2
33.7
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
53.5
0.19
1.8
76
39.9

Associated Gene:

Gene:
MMP1
Ensembl Gene ID:
ENSAPLG00000005987
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006239
133627802 - 133634554
6753