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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133629256_133630553_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
133629256 - 133630553
Intron Length:
1298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGAA
5'SS Class:
major
3'SS Sequence:
TTATATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATGTATTTATAT
Flanking Amino Acid:
IEKDEVLLFKEDKYWVIRGY
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.2
34.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87
0.83
0.8
85
35
Minor 5ss
28.6
-2.5
3.5
37.7
47.1
Minor BPS
49.1
0.01
1.8
68.5
42.3

Associated Gene:

Gene:
MMP1
Ensembl Gene ID:
ENSAPLG00000005987
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006239
133627802 - 133634554
6753