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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133630688_133631337_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
133630688 - 133631337
Intron Length:
650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACCA
5'SS Class:
major
3'SS Sequence:
TTCTTTTAACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTCTTTTAACC
Flanking Amino Acid:
LRGELIFFKGRYMLRKHPER
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67.2
38
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
78.8
0.65
0.9
74.4
39.3
Minor 5ss
32.3
-2
3
40.9
44.8
Minor BPS
78.2
0.86
1.1
83.25
29.3

Associated Gene:

Gene:
MMP1
Ensembl Gene ID:
ENSAPLG00000005987
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006239
133627802 - 133634554
6753