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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133631456_133631830_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
133631456 - 133631830
Intron Length:
375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TATCTTCCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTCTTCATTT
Flanking Amino Acid:
DDIDGIQAIYGQINAAVQPT
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
78.7
29.9
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
79.1
0.66
0.8
73.7
31
Minor 5ss
32.9
-1.9
2.9
37.3
41.2
Minor BPS
62.8
0.48
1.8
83.89
37.6

Associated Gene:

Gene:
MMP1
Ensembl Gene ID:
ENSAPLG00000005987
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006239
133627802 - 133634554
6753