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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133632647_133632730_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
133632647 - 133632730
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTATTCTAAATT
Flanking Amino Acid:
ADIVISFAYRDHQDNSPFDG
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.8
42.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
79.7
0.67
0.8
78.1
29.1
Minor 5ss
34.9
-1.7
3.3
47.4
48
Minor BPS
69
0.68
1.6
84.08
37.1

Associated Gene:

Gene:
MMP1
Ensembl Gene ID:
ENSAPLG00000005987
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006239
133627802 - 133634554
6753