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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133647041_133647587_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
133647041 - 133647587
Intron Length:
547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTGATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTCTTGATA
Flanking Amino Acid:
PEKDETHLFKGNEFWVVRGD
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
82.1
0.72
0.9
80.6
31.5
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
80.4
0.95
0.9
85.58
26.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026248
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019841
133645264 - 133652982
7719