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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133647722_133649382_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
133647722 - 133649382
Intron Length:
1661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTACATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTCAAAG
Flanking Amino Acid:
FGGEIMFFKDKHFWRKHPAV
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
71.6
40.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
70.1
0.45
1
68.7
41.4
Minor 5ss
35.3
-1.7
2.9
41.6
39
Minor BPS
53.1
-0
1.9
66.14
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026248
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019841
133645264 - 133652982
7719