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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133649509_133649657_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
133649509 - 133649657
Intron Length:
149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTTATTAAT
5'SS Class:
weak_major
3'SS Sequence:
ACAATGACCAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTCTATCACCT
Flanking Amino Acid:
KGIQYLYGNSLESAEIKDPT
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55
0.12
1.3
65.3
39.9
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
47.9
-0.1
1.1
41.7
36.6
Minor 5ss
36.7
-1.5
2.8
54.4
42.3
Minor BPS
48
-0
2
74.73
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026248
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019841
133645264 - 133652982
7719