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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133651706_133651794_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
133651706 - 133651794
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATCATA
5'SS Class:
strong_major
3'SS Sequence:
TTATATTGTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTTAT
U12 Branch Point Sequence:
TTTTCTCTATGT
Flanking Amino Acid:
PKWAKQVLTYRLLNSTPDLH
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
79.9
35
Major BPS
72.5
0.56
1.2
63.4
44
Major PPT
66.2
0.36
1.2
67.3
42.5
Minor 5ss
43
-0.8
2.9
57.8
46.4
Minor BPS
51.3
0.12
2.2
80.25
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026248
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019841
133645264 - 133652982
7719