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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133665912_133666015_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
133665912 - 133666015
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGGAGA
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAGCAT
U12 Branch Point Sequence:
TTTTTTTTTCCT
Flanking Amino Acid:
ADIMISFAAGFHGDFYSFDG
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
71.7
39.7
Major BPS
48.7
-0
1.4
57.8
39
Major PPT
89.8
0.9
0.6
89.2
19.6
Minor 5ss
34.1
-1.8
3.2
44.2
43.7
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006797
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007080
133660956 - 133667131
6176