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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133702386_133703025_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
133702386 - 133703025
Intron Length:
640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATATAGC
5'SS Class:
major
3'SS Sequence:
TCTTTTTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATAATTTTGATT
Flanking Amino Acid:
DRVDAVYYRNGYLYLFNGSL
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1
63.9
40.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
84.5
0.78
0.6
84.9
22.8
Minor 5ss
41.7
-0.9
2.7
51.2
40.6
Minor BPS
57.4
0.32
1.2
69.67
35.2

Associated Gene:

Gene:
MMP13
Ensembl Gene ID:
ENSAPLG00000007468
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007802
133701285 - 133708742
7458