Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133703130_133703896_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

133703130 - 133703896

Intron Length:

767

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGCTGC

5'SS Class:

strong_major

3'SS Sequence:

ATGTTTAATGTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTCTTTTATG

Flanking Amino Acid:

TLFFTGNKYWSYDEETELME

Intron Amino Acid Position:

405

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.3

0.9

73.2

39.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

68.9

0.43

64.3

41.1

Minor 5ss

44.2

-0.6

2.9

59.3

45.5

Minor BPS

68.5

0.44

1.6

74.98

37.4

Associated Gene:

Gene:

MMP13

Ensembl Gene ID:

ENSAPLG00000007468

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007802

133701285 - 133708742

7458