Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133704586_133705132_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

133704586 - 133705132

Intron Length:

547

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATGAGA

5'SS Class:

major

3'SS Sequence:

TTTTCTGAGCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTAAA

U12 Branch Point Sequence:

TTTTTCTGAGCT

Flanking Amino Acid:

LRGEMLVFKDRFFWRLHPQM

Intron Amino Acid Position:

307

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.7

0.7

71.5

39.9

Major BPS

65.2

0.38

0.9

65.5

27.9

Major PPT

0.38

1.1

62.8

43.4

Minor 5ss

31.7

-2.1

3.1

40.5

45.2

Minor BPS

68.4

0.66

1.7

88.74

35.9

Associated Gene:

Gene:

MMP13

Ensembl Gene ID:

ENSAPLG00000007468

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007802

133701285 - 133708742

7458