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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133707251_133708281_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
133707251 - 133708281
Intron Length:
1031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGCA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTCTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ATCTTCTTGACA
Flanking Amino Acid:
LKWSKTNLTYRIMNYTSDLR
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
77.4
30.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
76.1
0.59
1
72.5
37.2
Minor 5ss
32.3
-2
3.2
41.6
45
Minor BPS
73.6
0.74
1.1
75.98
35.1

Associated Gene:

Gene:
MMP13
Ensembl Gene ID:
ENSAPLG00000007468
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007802
133701285 - 133708742
7458