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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133754000_133754627_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
133754000 - 133754627
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
TTTTGTCTATTT
Flanking Amino Acid:
DLSNYDEDGAWPVLLDEFVE
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
69.1
0.48
1
70
32.1
Major PPT
83.2
0.75
0.8
77.4
35.8
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
47.8
-0
2.2
75.99
41.5

Associated Gene:

Gene:
DCUN1D5
Ensembl Gene ID:
ENSAPLG00000008281
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008622
133753680 - 133766433
12754