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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133754731_133755378_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
133754731 - 133755378
Intron Length:
648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACACATT
5'SS Class:
major
3'SS Sequence:
TTGTTTTCCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTTTGTAAAATT
Flanking Amino Acid:
LFSVFYQYLEQSKYRVMNKD
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.1
75.3
40.7
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
79.6
0.67
0.8
73.8
36.8
Minor 5ss
43.6
-0.7
3.3
66.1
45
Minor BPS
47.8
-0
2.2
76.08
41.4

Associated Gene:

Gene:
DCUN1D5
Ensembl Gene ID:
ENSAPLG00000008281
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008622
133753680 - 133766433
12754