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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133760654_133761018_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
133760654 - 133761018
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGTTTC
5'SS Class:
weak_major
3'SS Sequence:
TTTTCCCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TACATATTAACT
Flanking Amino Acid:
CEDIGVEPENIIMLVLAWKL
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
77
32.4
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
86.6
0.82
0.7
78.3
30.6
Minor 5ss
61.5
0.39
2.2
74.2
34.9
Minor BPS
60.3
0.4
1.7
74.9
41.4

Associated Gene:

Gene:
DCUN1D5
Ensembl Gene ID:
ENSAPLG00000008281
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008622
133753680 - 133766433
12754