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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133761090_133763401_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
133761090 - 133763401
Intron Length:
2312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTGAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TGTTACTTATAT
Flanking Amino Acid:
KCLAWFYEYAGPDEVVGPEG
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
76.3
32.4
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
81.1
0.7
1
82.9
32.5
Minor 5ss
33.8
-1.8
2.8
42
44.2
Minor BPS
58.4
0.34
1.9
79.55
41.7

Associated Gene:

Gene:
DCUN1D5
Ensembl Gene ID:
ENSAPLG00000008281
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008622
133753680 - 133766433
12754