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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133763494_133765951_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
133763494 - 133765951
Intron Length:
2458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGCG
5'SS Class:
major
3'SS Sequence:
GTGTTTCTCTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TAACACTTATTA
Flanking Amino Acid:
EAGFKKCKLGSYCRSQAPGK
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.5
0.34
1.3
53.2
43
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
67.8
0.4
1.1
71.8
38.4
Minor 5ss
34
-1.8
3.7
47.7
48
Minor BPS
49.4
-0
1.7
60.4
39

Associated Gene:

Gene:
DCUN1D5
Ensembl Gene ID:
ENSAPLG00000008281
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008622
133753680 - 133766433
12754