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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133766677_133768865_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
133766677 - 133768865
Intron Length:
2189

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GCG|GCCACCAAG
5'SS Class:
weak_major
3'SS Sequence:
TTTATTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTTTTGATT
Flanking Amino Acid:
LRRSDGGLSAIEATDSKNNV
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.4
0.08
1.4
47.5
48.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
86.7
0.83
0.8
81.1
35.1
Minor 5ss
29.8
-2.3
3.8
40.8
45.2
Minor BPS
77.3
0.94
1
89.84
27.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008375
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032010
133766369 - 133780695
14327