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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133770652_133771216_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
133770652 - 133771216
Intron Length:
565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATATTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATAGTATTAATT
Flanking Amino Acid:
FKDLFDDIAKDYCNLDSLSL
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1
76.6
32.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
61.5
0.39
2.4
74.9
35.1
Minor BPS
56
0.27
1.7
71.91
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008375
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032010
133766369 - 133780695
14327
ENSAPLT00000008789
133766497 - 133789553
23057