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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133772391_133772715_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
133772391 - 133772715
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTATTC
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TTTTCTTTTATA
Flanking Amino Acid:
LVKLGKRLDEVLTVRTLHEK
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
70.5
34.3
Major BPS
79.4
0.73
1
80.1
32
Major PPT
91.5
0.93
0.6
88
22
Minor 5ss
48.7
-0.1
2.7
68.2
42.9
Minor BPS
72.9
0.71
1.5
82.82
31.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008375
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008789
133766497 - 133789553
23057
ENSAPLT00000032010
133766369 - 133780695
14327