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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133772851_133772950_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
133772851 - 133772950
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAATGC
5'SS Class:
major
3'SS Sequence:
GATTGTCTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
CAGTCCTAAAGT
Flanking Amino Acid:
NPVHYNPYTEPLWKAAVSQF
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
61.9
37.8
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
72.2
0.5
0.9
62.7
43.9
Minor 5ss
43.7
-0.7
3
59.5
45.2
Minor BPS
52.5
0.16
2
68.48
48.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008375
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032010
133766369 - 133780695
14327
ENSAPLT00000008789
133766497 - 133789553
23057