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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133778378_133778480_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
133778378 - 133778480
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTTTTTAACA
Flanking Amino Acid:
RKWHTNFIEKVVSLMNIDLL
Intron Amino Acid Position:
701

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.7
0.78
0.9
81.5
34.3
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
81.8
1
0.9
85.09
27.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008375
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032010
133766369 - 133780695
14327
ENSAPLT00000008789
133766497 - 133789553
23057