Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133778580_133779577_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

133778580 - 133779577

Intron Length:

998

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAG|GCAGGGTTT

5'SS Class:

strong_major

3'SS Sequence:

TGTTATATTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATAAAT

U12 Branch Point Sequence:

ATTACGTAAAAT

Flanking Amino Acid:

RTGFASLESQGFKSCDMKAW

Intron Amino Acid Position:

734

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

78.7

35.7

Major BPS

65.7

0.39

71.3

30.3

Major PPT

77.4

0.62

0.9

74.9

39.5

Minor 5ss

30.9

-2.2

4.5

54.5

49.7

Minor BPS

-0.1

2.4

72.46

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008375

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032010

133766369 - 133780695

14327

ENSAPLT00000008789

133766497 - 133789553

23057