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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133780036_133780497_F

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
133780036 - 133780497
Intron Length:
462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTCA
5'SS Class:
major
3'SS Sequence:
CAATGTTGAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TTTCCATGAAAT
Flanking Amino Acid:
RLAEVSNQFKEWIVIGQVDM
Intron Amino Acid Position:
857

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
72.2
33.2
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
49.1
-0
1.2
48.7
42.6
Minor 5ss
46.6
-0.3
2.4
59.8
44.6
Minor BPS
58
0.33
1.8
81.8
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008375
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032010
133766369 - 133780695
14327
ENSAPLT00000008789
133766497 - 133789553
23057