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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133786938_133787656_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
133786938 - 133787656
Intron Length:
719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAATG
5'SS Class:
major
3'SS Sequence:
ACTTGCTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCATTTTAACA
Flanking Amino Acid:
ESHQLMITEQIEIMKGNVMS
Intron Amino Acid Position:
1031

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.1
75.5
40.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.8
0.67
0.9
72.5
37.1
Minor 5ss
42.6
-0.8
3
57.6
46.6
Minor BPS
70.7
0.65
1.2
75.15
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008375
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008789
133766497 - 133789553
23057