Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133788809_133788900_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

133788809 - 133788900

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTATGATCT

5'SS Class:

strong_major

3'SS Sequence:

GATTTTAATGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTGATTTTAATG

Flanking Amino Acid:

EKAKEDWITFRSKTNLFEEF

Intron Amino Acid Position:

1151

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

76.9

32.4

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

73.3

0.52

67.4

42.5

Minor 5ss

46.7

-0.3

2.8

45.1

Minor BPS

62.5

0.25

1.4

62.98

39.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008375

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008789

133766497 - 133789553

23057