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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133789016_133789340_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
133789016 - 133789340
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCCTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TACATATGAATT
Flanking Amino Acid:
KLQKEVDRYKMIIPILKYIR
Intron Amino Acid Position:
1190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
75.9
34.8
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
83
0.74
0.7
78.1
30.2
Minor 5ss
38.3
-1.3
3.1
50.9
45.7
Minor BPS
47.7
-0.1
1.7
63.74
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008375
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008789
133766497 - 133789553
23057