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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133839618_133840432_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
133839618 - 133840432
Intron Length:
815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGACAAA
5'SS Class:
major
3'SS Sequence:
TCTTTATCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATCC
Flanking Amino Acid:
SHRLQSSLDQERDAYLPLAE
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
67.5
39.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
81.9
0.72
0.8
76.7
30.9
Minor 5ss
36.7
-1.5
3.2
47.6
48.1
Minor BPS
77.1
0.83
1.5
86.09
32

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020307
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038702
133834807 - 133852453
17647