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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133840577_133841857_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
133840577 - 133841857
Intron Length:
1281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTCT
5'SS Class:
major
3'SS Sequence:
ACTTTATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TCCACATGAATT
Flanking Amino Acid:
LFQRALQSEQDSSNTEERIK
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
76
33.7
Major BPS
75.1
0.62
1
65.6
41
Major PPT
80.3
0.68
0.8
78.2
34.6
Minor 5ss
49
-0.1
2.4
68.6
42
Minor BPS
49.6
0.05
1.8
66.72
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020307
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038702
133834807 - 133852453
17647