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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133841948_133845803_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
133841948 - 133845803
Intron Length:
3856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTG
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
ATGAACATACAA
Flanking Amino Acid:
YEYVCRCLFKADQLMFALHF
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.99
0.8
81.6
33.2
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
82.8
0.74
0.9
80.2
37.3
Minor 5ss
41.6
-0.9
3.1
55.7
48.5
Minor BPS
40.3
-0.7
2
50.13
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020307
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038702
133834807 - 133852453
17647