Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133847408_133848951_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

133847408 - 133848951

Intron Length:

1544

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTAAGCTAC

5'SS Class:

major

3'SS Sequence:

TTGTCTCAATAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTTAT

U12 Branch Point Sequence:

CTTGTCTCAATA

Flanking Amino Acid:

VIIGDTIRKSDSQRSARDQI

Intron Amino Acid Position:

277

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.3

0.48

1.1

63.4

38.1

Major BPS

74.8

0.62

0.9

63.7

35.1

Major PPT

60.3

0.23

1.2

66.3

Minor 5ss

46.3

-0.4

2.8

64.5

41.1

Minor BPS

56.6

0.2

1.7

66.51

40.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020307

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038702

133834807 - 133852453

17647