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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133852374_133853781_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
133852374 - 133853781
Intron Length:
1408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATATTCATAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
83.2
0.75
0.9
77
36
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
62.5
0.39
1.5
71.38
34.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030587
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025221
133850125 - 133927017
76893