Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133857183_133860370_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

133857183 - 133860370

Intron Length:

3188

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATTGTG

5'SS Class:

strong_major

3'SS Sequence:

TTATCTTTGACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATATAAC

U12 Branch Point Sequence:

TTATCTTTGACA

Flanking Amino Acid:

VIPWLPVLEKELNTLQPQPN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.7

0.84

0.9

78.1

36.6

Major BPS

69.1

0.48

32.1

Major PPT

0.65

76.2

37.6

Minor 5ss

36.4

-1.5

3.3

49.3

46.9

Minor BPS

79.6

0.92

83.06

30.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030587

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025221

133850125 - 133927017

76893