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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133861275_133863189_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
133861275 - 133863189
Intron Length:
1915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTAAATGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTTTTTAAAT
Flanking Amino Acid:
CQERRNYIPQGWTKFYEFSL
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
83.5
28.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.7
0.49
1.1
67.5
42.4
Minor 5ss
43.9
-0.7
3.1
65.3
45.8
Minor BPS
72.7
0.79
1.3
84.29
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030587
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025221
133850125 - 133927017
76893