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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133863266_133864813_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
133863266 - 133864813
Intron Length:
1548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
GATATATTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTCTAATTGATA
Flanking Amino Acid:
GFDIIDGLFEGSKDFQWEFV
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.4
38.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
69.8
0.45
1
62.3
43.1
Minor 5ss
28.6
-2.5
2.7
27.3
36.3
Minor BPS
53.3
0.1
1.8
68.39
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030587
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025221
133850125 - 133927017
76893