About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133865023_133865898_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
133865023 - 133865898
Intron Length:
876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCAAATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GTTATTTCAAAT
Flanking Amino Acid:
ISLPNSCSILDYRHIIESLP
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
81.5
31.6
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
67.1
0.39
1
61.3
38.7
Minor 5ss
45.5
-0.5
2.5
56.3
43.3
Minor BPS
51.5
0.12
1.6
70.83
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030587
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025221
133850125 - 133927017
76893