Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133883375_133894871_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

133883375 - 133894871

Intron Length:

11497

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAAAG

5'SS Class:

strong_major

3'SS Sequence:

ATGTGTTTTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAC

U12 Branch Point Sequence:

AGTTTATTAACT

Flanking Amino Acid:

VLNLWKKLNQNSNLIHRKVS

Intron Amino Acid Position:

299

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

71.6

40.1

Major BPS

81.9

0.79

0.8

81.9

Major PPT

76.4

0.59

0.9

Minor 5ss

31.4

-2.1

3.1

46.4

Minor BPS

70.6

0.72

1.5

84.39

35.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030587

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025221

133850125 - 133927017

76893