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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_133898397_133915491_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
133898397 - 133915491
Intron Length:
17095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
TTTTCCTTTTTT
Flanking Amino Acid:
SLVARALAVQNWVEKSKRQK
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
76.9
34.6
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
90
0.9
0.6
89.4
19.2
Minor 5ss
39.6
-1.2
2.8
50.5
45.7
Minor BPS
48.5
-0
3.6
87.87
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030587
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025221
133850125 - 133927017
76893