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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_134029657_134034118_F

Intron Information:

Intron Rank:
127097
Intron Class:
major
Intron Phase:
Intron Coordinates:
134029657 - 134034118
Intron Length:
4462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
CTCTTGCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
83.6
22.5
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
85.5
0.8
0.7
77
31.7
Minor 5ss
35
-1.7
2.8
42.9
44.7
Minor BPS
46.5
-0.1
2.3
67.26
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018516
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038683
134028839 - 134059954
31116
ENSAPLT00000037698
134028839 - 134070913
42075
ENSAPLT00000046869
134028839 - 134041763
12925