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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_134036743_134070585_F

Intron Information:

Intron Rank:
127099
Intron Class:
major
Intron Phase:
Intron Coordinates:
134036743 - 134070585
Intron Length:
33843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATGTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCTTTATAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
82.8
0.74
0.9
77.3
36.3
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
67.3
0.62
1.6
83.99
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018516
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037698
134028839 - 134070913
42075