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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_134080689_134081352_F

Intron Information:

Intron Rank:
125926
Intron Class:
major
Intron Phase:
Intron Coordinates:
134080689 - 134081352
Intron Length:
664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAAGTT
5'SS Class:
major
3'SS Sequence:
TCTGTTTTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAC
U12 Branch Point Sequence:
TCTGTTTTACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
72.3
37.6
Major BPS
68.7
0.47
1.2
63.1
44.5
Major PPT
75.5
0.57
0.9
70.3
40.1
Minor 5ss
34.3
-1.8
3.9
55.2
49
Minor BPS
50.7
0.02
1.7
61.33
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017841
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033165
134080293 - 134086077
5785
ENSAPLT00000030507
134080293 - 134086077
5785